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231 Koshland Hall, Berkeley CA 94720 kseniak [at] berkeley.edu.
Upcoming science presentations at conferences and symposia
Main Presenter - Title - Conference information
In 2022, lab members will be attending and presenting at the Fungal Genetics Conference, Maize Genetics conference, The Molecular Plant Microbe Interaction Congress, APS Plant Health 2022 and more. Watch this space for the announcements.
Ksenia - International Brachypodium Meeting, June 14-16, 2022 (virtual)
Ksenia - "From understanding natural diversity to precise modifications of plant immune receptors" - June 16th, 2022 University of Goettingen, Germany (virtual)
Ksenia - "Catching the right mutation: lessons learned from the enhanced disease resistance mutants of wheat" - Plant Health 2022, Pittsburg, USA.
Past talks (recorded)
Pierre Joubert - "Characterizing the extrachromosomal circular DNAs of Magnaporthe oryzae and their potential role in adaptation" - The 31st Fungal Genetics Conference, March 15-20 2022 - link to recording (15 min talk with 4 min of questions)
Fraces (Grace) Stark - "Elucidating Fungal Immune Receptors and Testing the Potential Role of Nucleotide-binding Domain Leucine-rich Repeat-like Proteins (NLR-like) Against Bacterial Antagonists" - The 31st Fungal Genetics Conference, Asilomar March 15-20 2022, selected talk (check here later for a link to recording)
Erin Baggs - "Lessons from loss; plant immune signaling pathways and pathogen interactions from land to water" - PhD finishing talk, January 13th - link to recording (46 min with a 3 min intro by Ksenia)
Fraces (Grace) Stark - "Fungal Immune Systems with Grace Stark" - Central Texas Mycological Society, Nov 18th 2021 7-9PM CT invited talk. Open to public with livestream on Youtube - link to recording (~1 hr 30 min with discussion)
Ksenia - "Plant immune receptors, pathogen effectors and the evolutionary game of 'Go' that they play", North Carolina State University, Nov 1st 2021. invited seminar - link to recording (director's cut 55 min, with introduction by Prof Peter Balint-Kurti)
Ksenia - Catching the right mutation - enhanced disease resistance mutants in wheat protect against stripe rust and other pathogens, America Phytopathological Society, 2021 - link to recording (12 min)
Who we are and what we do
Krasileva lab an inter-disciplinary group of people who combine new technologies, basic and translational research. Our common goal is to understand innate immunity, a system that maintains plant health. We focus on evolution and function of immune genes, as well as the mechanisms that regulate genetic diversity in plants and fungi.
The lab is located in Koshland Hall, we are part of Department of Plant and Microbial Biology as well as the Innovative Genomics Institute and The Center for Computational Biology at the University of California Berkeley.
If you are interested in joining the lab, here is how you can approach us:
- undergraduate research: reach out to us directly before the semester begins or look for projects at URAP and SPUR.
- graduate students: we are part of graduate programs in Microbiology and Plant Biology as well as Center for Computational Biology. To discuss a rotation, please reach out a few weeks in advance.
- postdocs: please send Ksenia your CV and a list of postdoc fellowships you would like to apply for.
- staff: occassionally, positions become available. Please, watch this space or send us a note.
My aspiration is to build the lab based on honesty and transparency, to ensure open communication and to maintain the highest quality of research and strongest work ethic without sacrificing our health or wellbeing of our families. Our lab culture is summarized in the Krasileva Lab Charter
If you have any questions about Krasileva Lab, do not hesitate to contact me.
May 2022 - new preprint! (yes, we know, we keep writing them)
We have more exciting new research. Do you remember our previous article on computational structural genomics in Magnaporthe oryzae? Here is the part two of this research. If you have not done this already, go and read about comparative computational structural genomics across many fungal pathogens.
March 2022 - read new preprints from the lab
This has been an unprecedentedly productive start of the year. We have exciting new research coming out. Apologies, I have been disturbed by all ongoing events and Slacking to update this website. Here are links to two new lab led preprints!
January 2022 - Congratulations Kyungyong and welcome new UGs
In a latest collaborative preprint, Kyungyong describes his quest for high quality genome of a highly heterozygous wild tomato (reservoir of disease resistance, it also smells nice and very unique). Kyungyong presents it as a resource for the community, and also in depth unique exploration of NLR diversity on haplotype level. This preprint marks the 25th publication since the establishment of Krasileva Lab in December 2014.
- A draft genome assembly for the heterozygous wild tomato Solanum habrochaites highlights haplotypic structural variations of intracellular immune receptors"
This month, we also welcome a new cohort of the undergraduate apprentices. Welcome William, Mari, Marcus, and Duke. Sarah Song and Anne Nakamoto continue their studies, Sarah rapidly learning comparative plant genomics, and Anne focusing on her senior thesis on Magnaporthe comparative genomics.
Krasileva Lab News recaps
2021 lab news recap - link
2020 lab news recap - link
2019 lab news recap - link