_DSF3835

Biosketch

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PhD - 2011, Microbiology, Designated Emphasis in Genomics and Computational Biology University of California, Berkeley, USA

BS  - 2005Plant Genetics and Microbiology University of California, Berkeley, USA

Highlights

"From plant immunity to food security" - an interview with Ksenia Krasileva, BMC Biology 2018 16:123 (link

Awards

2018 - Carlotta Award for outstanding contributions to wheat research

Publications

Krasileva lab member are in bold

2020

30. Schwessinger B and Krasileva KV "Editorial overview: Biotic interactions — from single molecules to complex ecosystems" Current Opinion in Plant Biology, v56 Aug 2020 https://doi.org/10.1016/j.pbi.2020.06.004 Editorial.

29. Prigozhin DM and Krasileva KV "Intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites" bioRxiv v1 July 2020 https://doi.org/10.1101/2020.07.10.190785 Research article

28. Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs ELSree KS, Appenroth KJ, Fuchs J, Jupe, Sandoval JP, Krasileva KV, Borisjuk L, Mockler TC, Ecker JRMartienssen RA, Lam E "Genome and time-of-day transcriptome of Wolffia australiana link morphological extreme minimization with un-gated plant growth" bioRxiv April 2020 https://doi.org/10.1101/2020.03.31.018291 Research article

27. Baggs EL, Monroe JG, Thanki AS, O'Grady R, Schudoma C, Haerty W, Krasileva KV "Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Co-evolved Components of Plant Immunity and Drought Response." The Plant Cell (2020). (bioRxiv March, Nov 2019: v1, v2) https://doi.org/10.1105/tpc.19.00903 Research article

26. Steuernagel B, Witek K, Krattinger SG, Ramirez-Gonzalez RH, Schoonbeek HJ, Yu G, Baggs E, Witek A, Yadav I, Krasileva KV, Jones JD, Uauy C, Keller B, Ridout CJ, Wulff BB "The NLR-Annotator tool enables annotation of the intracellular immune receptor repertoire." Plant Physiology 2020 Mar 17.  https://doi.org/10.1104/pp.19.01273 Research article

25. Tamborski J and Krasileva KVEvolution of Plant NLRs: From Natural History to Precise Modifications”  Annu Rev Plant Biol.2020 Feb 24. https://doi.org/10.1146/annurev-arplant-081519-035901 Review

2019

24.  Krasileva KV "The role of transposable elements and DNA damage repair mechanisms in gene amplification and protein domain shuffling in plant genomes" Current Opinion in Plant Biology (2019) 48: 18-25 (PeerJ preprint Jan 2019) https://doi.org/10.1016/j.pbi.2019.01.004 Review

2018

23. Bailey PCSchudoma C, Jackson W, Baggs EDagdas G, Haerty W, Moscou M, Krasileva KV "Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions" Genome Biology 2018 19:23 (first at bioRxiv) Research article

2017

22. Krasileva KV "Secrets of a hardy crop: New genomic resources for pearl millet are revealing how crops stand up to challenging environments" Nature Biotechnology, 35(10) Oct 2017 News and Views

21. Baggs EDagdas GKrasileva KV "NLR diversity, helpers and integrated domains: making sense of the NLR IDentity" Curr Opinion in Plant Biology, 2017 38:59-67. https://doi.org/10.1016/j.pbi.2017.04.012 Review

20. Bevan MW, Uauy C, Wulff BBH, Zhou1 J, Krasileva KV, and Clark M "Genomic Innovation for Crop Improvement" Nature, Mar 15;543(7645):346-354. https://doi.org/10.1038/nature22011 Review

19. Krasileva KV, Vasquez-Gross H, Bailey P, Paraiso F, Clissold L, Howell T, Ramirez-Gonzalez R, Wang X, Ayling S, Fosker C, Phillips A, Uauy C, Dubcovsky "Uncovering hidden variation in polyploid wheat." Proceeding of National Academy of Sciences U S A, 2017 Feb 7;114(6):E913-E921 https://doi.org/10.1073/pnas.1619268114 Research article 

18. Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD "An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations." Genome Res. 2017 May;27(5):885-896 (bioRxiv) https://doi.org/10.1101/gr.217117.116 Research article 

2016

17. Sarris PF, Cevik V, Dagdas G, Jones JD, Krasileva KV "Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens" BMC Biology, 2016 14(1):8. https://doi.org/10.1186/s12915-016-0228-7 Research article

16. Petre B, Saunders DG, Sklenar J, Lorrain C, Krasileva KV, Win J, Duplessis S, Kamoun S. "Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies" PLoS One 2016 11(2):e0149035. (bioRxiv) Research article

2015

15. Schwessinger B, Bart R, Krasileva KV and Coaker G. "Focus issue on plant immunity: from model systems to crop species." Front Plant Sci. 2015 6:195. Editorial

14. Wu CH, Krasileva KV, Banfield MJ, Terauchi R, Kamoun S. "The "sensor domains" of plant NLR proteins: more than decoys?" Front Plant Sci. 2015 6:134. Opinion

2014

13. Henry IM, Nagalakshmi U, Lieberman MC, Ngo KJ, Krasileva KV, Vasquez-Gross H, Alina Akunova A, Akhunov E, Dubcovsky J, Tai TH and Comai L "Efficient genome-wide detection and cataloguing of EMS-induced mutations using exome capture and next-generation sequencing." Plant Cell, 2014 26(4):1382-1397. Research article

2013

12. Krasileva KV, Buffalo V, Bailey P, Pearce S, Ayling S, Tabbita F, Soria M, Wang S, Consortium I, Akhunov E, Uauy C, Dubcovsky J "Separating homeologs by phasing in the tetraploid wheat transcriptome," Genome Biol. 2013 14(6):R66. Research article

2012

11. Steinbrenner AD, Goritschnig S, Krasileva KV, Schreiber KJ, Staskawicz BJ. "Effector recognition and activation of the Arabidopsis thaliana NLR innate immune receptors." Cold Spring Harb Symp Quant Biol. 2012 77:249-57.

10. Bart R, Cohn M, Kassen A, McCallum EJ, Shybut M, Petriello A, Krasileva K, Dahlbeck D, et al. "High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance." PNAS, 2012 109(28):E1972-9. Research article

9. Goritschnig S, Krasileva KV, Dahlbeck D, Staskawicz BJ. "Computational prediction and molecular characterization of an oomycete effector and the cognate Arabidopsis resistance gene" PLoS Genetics, 2012 8(2):e1002502. Research article

8. Win J, Krasileva KV, Kamoun S, Shirasu K, Staskawicz BJ, Banfield MJ. "Sequence divergent RXLR effectors share a structural fold conserved across plant pathogenic oomycete species" PLoS Pathogens, 2012 8(1): e1002400. Research article

2011

7. Krasileva KV, Zheng C, Leonelli L, Goritschnig S, Dahlbeck D, Staskawicz BJ. "Global analysis of Arabidopsis / downy mildew interactions reveals prevalence of incomplete resistance and rapid evolution of pathogen recognition." PLoS One, 2011 6: e28765. Research article

6. Zhao B, Dahlbeck D, Krasileva KV, Fong RW, Staskawicz BJ. "Computational and Biochemical Analysis of the Xanthomonas Effector AvrBs2 and Its Role in the Modulation of Xanthomonas Type Three Effector Delivery." PLoS Pathogens, 2011 12 :e1002408. Research article

5. Chou S*, Krasileva KV*, Holton J, Steinbrenner A, Alber T, Staskawicz BJ. (2011) "Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces." PNAS, 2011 108(32): 13323-8. Research article

*equal first author contribution 

4. Potnis N*, Krasileva K*, Chow V, Almeida NF Jr, Patil PB, et al. "Comparative Genomics Reveals Diversity among Xanthomonads Infecting Tomato and Pepper." BMC Genomics, 2011 12(1): 146. Research article

*equal first author contribution

2010

3. Krasileva KV, Dahlbeck D, Staskawicz BJ. "Activation of an Arabidopsis Resistance Protein Is Specified by the in Planta Association of Its Leucine-Rich Repeat Domain with Cognate Oomycete Effector." Plant Cell, 2010 22:1-16. Research article

2. Dulla GF, Krasileva KV, Lindow SE. "Interference of Quorum Sensing in Pseudomonas syringae by Bacterial Epiphytes that Limit Iron Availability." Environmental Microbiology, 2010, 12(6): 1762-74. Research article

2007

1. Win J, Morgan W, Bos J, Krasileva KV, Cano LM, Chaparro-Garcia A, Ammar L, Staskawicz BJ, Kamoun S. "Adaptive Evolution Has Targeted the C-terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes." Plant Cell, 2007 19: 2349-69. Research article