krasileva-profile

231 Koshland Hall, Berkeley, CA 94720

PhD - 2011, Microbiology, Designated Emphasis in Genomics and Computational Biology University of California, Berkeley, USA

BS  - 2005Plant Genetics and Microbiology University of California, Berkeley, USA

 

Publications (23 total, 6 first/co-first, 4 corresponding author)

Krasileva lab member names underlined

2018

23. Bailey PCSchudoma C, Jackson W, Baggs EDagdas G, Haerty W, Moscou M, Krasileva KV "Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions" Genome Biology 2018 19:23 (first at BioRxiv)

2017

22. Krasileva KV "Secrets of a hardy crop: New genomic resources for pearl millet are revealing how crops stand up to challenging environments" Nature Biotechnology, 35(10) Oct 2017 News and Views

21. Baggs EDagdas GKrasileva KV "NLR diversity, helpers and integrated domains: making sense of the NLR IDentity" Curr Opinion in Plant Biology, 2017 38:59-67. Review

20. Bevan MW, Uauy C, Wulff BBH, Zhou1 J, Krasileva KV, and Clark M "Genomic Innovation for Crop Improvement" Nature, Mar 15;543(7645):346-354. Review

19. Krasileva KV, Vasquez-Gross H, Bailey P, Paraiso F, Clissold L, Howell T, Ramirez-Gonzalez R, Wang X, Ayling S, Fosker C, Phillips A, Uauy C, Dubcovsky "Uncovering hidden variation in polyploid wheat." Proceeding of National Academy of Sciences U S A, 2017 Feb 7;114(6):E913-E921

18. Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD "An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations." Genome Res. 2017 May;27(5):885-896 (first on BioRxiv)

2016

17. Sarris PF, Cevik V, Dagdas G, Jones JD, Krasileva KV "Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens" BMC Biology, 2016 14(1):8.

16. Petre B, Saunders DG, Sklenar J, Lorrain C, Krasileva KV, Win J, Duplessis S, Kamoun S. "Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies" PLoS One 2016 11(2):e0149035. (first on BioRxiv)

2015

15. Schwessinger B, Bart R, Krasileva KV and Coaker G. "Focus issue on plant immunity: from model systems to crop species." Front Plant Sci. 2015 6:195.

14. Wu CH, Krasileva KV, Banfield MJ, Terauchi R, Kamoun S. "The "sensor domains" of plant NLR proteins: more than decoys?" Front Plant Sci. 2015 6:134.

2014

13. Henry IM, Nagalakshmi U, Lieberman MC, Ngo KJ, Krasileva KV, Vasquez-Gross H, Alina Akunova A, Akhunov E, Dubcovsky J, Tai TH and Comai L "Efficient genome-wide detection and cataloguing of EMS-induced mutations using exome capture and next-generation sequencing." Plant Cell, 2014 26(4):1382-1397.

2013

12. Krasileva KV, Buffalo V, Bailey P, Pearce S, Ayling S, Tabbita F, Soria M, Wang S, Consortium I, Akhunov E, Uauy C, Dubcovsky J "Separating homeologs by phasing in the tetraploid wheat transcriptome," Genome Biol. 2013 14(6):R66.

2012

11. Steinbrenner AD, Goritschnig S, Krasileva KV, Schreiber KJ, Staskawicz BJ. "Effector recognition and activation of the Arabidopsis thaliana NLR innate immune receptors." Cold Spring Harb Symp Quant Biol. 2012 77:249-57.

10. Bart R, Cohn M, Kassen A, McCallum EJ, Shybut M, Petriello A, Krasileva K, Dahlbeck D, et al. "High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance." PNAS, 2012 109(28):E1972-9.

9. Goritschnig S, Krasileva KV, Dahlbeck D, Staskawicz BJ. "Computational prediction and molecular characterization of an oomycete effector and the cognate Arabidopsis resistance gene" PLoS Genetics, 2012 8(2):e1002502.

8. Win J, Krasileva KV, Kamoun S, Shirasu K, Staskawicz BJ, Banfield MJ. "Sequence divergent RXLR effectors share a structural fold conserved across plant pathogenic oomycete species" PLoS Pathogens, 2012 8(1): e1002400.

2011

7. Krasileva KV, Zheng C, Leonelli L, Goritschnig S, Dahlbeck D, Staskawicz BJ. "Global analysis of Arabidopsis / downy mildew interactions reveals prevalence of incomplete resistance and rapid evolution of pathogen recognition." PLoS One, 2011 6: e28765.

6. Zhao B, Dahlbeck D, Krasileva KV, Fong RW, Staskawicz BJ. "Computational and Biochemical Analysis of the Xanthomonas Effector AvrBs2 and Its Role in the Modulation of Xanthomonas Type Three Effector Delivery." PLoS Pathogens, 2011 12 :e1002408.

5. Chou S*, Krasileva KV*, Holton J, Steinbrenner A, Alber T, Staskawicz BJ. (2011) "Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces." PNAS, 2011 108(32): 13323-8. *equal first author contribution

4. Potnis N*, Krasileva K*, Chow V, Almeida NF Jr, Patil PB, et al. "Comparative Genomics Reveals Diversity among Xanthomonads Infecting Tomato and Pepper." BMC Genomics, 2011 12(1): 146.*equal first author contribution

2010

3. Krasileva KV, Dahlbeck D, Staskawicz BJ. "Activation of an Arabidopsis Resistance Protein Is Specified by the in Planta Association of Its Leucine-Rich Repeat Domain with Cognate Oomycete Effector." Plant Cell, 2010 22:1-16.

2. Dulla GF, Krasileva KV, Lindow SE. "Interference of Quorum Sensing in Pseudomonas syringae by Bacterial Epiphytes that Limit Iron Availability." Environmental Microbiology, 2010, 12(6): 1762-74.

2007

1. Win J, Morgan W, Bos J, Krasileva KV, Cano LM, Chaparro-Garcia A, Ammar L, Staskawicz BJ, Kamoun S. "Adaptive Evolution Has Targeted the C-terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes." Plant Cell, 2007 19: 2349-69